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Data Policy
… of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a limited and time-sensitive protection of certain … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
Learn more
Natural Prodcast Episode 16: Marcy Balunas
… in natural products right. There’s many different avenues toward chemistry. But that’s kind of where I had you. How … tell us about this squid-microbe relationship. Or is it a microbial community with microbial community relationship?  … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A … are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a subsection of that called … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial …
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Natural Prodcast Episode 15: Katherine Duncan
… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I … And sometimes, in terms of biological activities– like antimicrobial or something– sometimes a little difference is … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
Learn more
FICUS
… call represents a unique opportunity for researchers to request the capabilities and expertise of multiple DOE … they must utilize a broad range of the capabilities across at least two of the facilities, and generate datasets … provides customized analysis, the JGI also participates in publication of results. …
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Natural Prodcast Episode 9: Roger Linington
… episode 9 of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British … to try and create an open source database of all known microbial natural products. So if you think about natural … sometimes. And some of the really early work – it took a long time for .. I mean, structural elucidation was …
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Natural Prodcast Episode 18: A CSP Primer
… If you stick around for the next few months, you’re going to hear my last interview with my co-host Alison Takemura, … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Secondary Metabolites Program
… Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, … for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in … products and bioenergy crop enhancement. The program aims to tap into the largely unexplored biochemical diversity …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … products or secondary metabolism, depending on which term you prefer. In this episode we’re going to finish up by … of that pure molecule. And that can that can take a long time depending on how the purification goes. In order …
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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews … we can predict an enzymes synthetic capabilities. Also, along the way, I declared a position on candy corn, which is … DAN UDWARY: So I think I associate your work with the term biocatalysis . I wonder would you say that’s fair? …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I … ranging conversation, and we could have gone on for a lot longer than we did, and I can say without reservation that … of thought with that. So some people are interested in cave microbial– people are interested in the more extreme …
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