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Plant Program
… by environmental change, focusing on plant resilience — highlighting the vulnerabilities of monocultures and the … descendants of ancestral genes are constructed at key phylogenetic nodes. These families allow easy access to … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Natural Prodcast Episode 16: Marcy Balunas
… tell us about this squid-microbe relationship. Or is it a microbial community with microbial community relationship?  … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … metabolism you know those numbers are still actually pretty high in terms of understanding from just sequence gazing …
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Fungal & Algal Program
… is on large-scale sequencing efforts that survey the vast phylogenetic and ecological diversity of fungi and algae, … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and … comparative and genome-centric analyses of fungi and community annotation. … Phycocosm is a comprehensive …
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Data Policy
… all user projects accepted FY22 and later through the Community Science Program (CSP), Facilities Integrating … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … repositories until the earliest of three points:  (1) publication of the data (including, but not limited to, …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … expands the bacterial and archaeal orders as seen on the phylogenetic tree, with new lineages of uncultivated genomes … but in subtle ways that affect fitness. And so, doing a high level kind of analysis, you just might not be able to …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… of these compounds, which, in turn, translate into a high chemical diversity. So that’s just the type of … UGA-Langebio in Irapuato, Mexico. His interests are in microbial diversity and evolution, particularly as how … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Mission
… and professional expertise to support the global research community in studies of complex biological and environmental … U.S. Department of Energy.   The JGI provides integrated high-throughput sequencing, DNA design and synthesis, … went on to advance basic science by sequencing scores of microbial species as well as several model organisms and …
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DNA Synthesis Program
… tools that enhance biofuel production and biosystem design. High-throughput design and synthesis capabilities accelerate … descendants of ancestral genes are constructed at key phylogenetic nodes. These families allow easy access to … … Synthesis Capabilities & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … …
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FICUS
… research proposal.  Successful applications will focus on high-risk/high-payoff proposals within the focused topic … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … samples of the spatial, temporal, taxonomic (environmental, microbial, plants, invertebrate, and vertebrate), and …
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High-resolution phylogenetic microbial community profiling
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Synthetic Biology Lab
DNA synthesis and assembly technologies to the broader community.  We focus our efforts on integrating database … such as those involving biosynthetic clusters, or high complexity combinatorial libraries.  We have developed … particular through adoption of lab automation enabling ever-higher levels of throughput. We also develop methods for …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida Everglades evokes images … the latest molecular techniques to learn more about the microbial communities in the Arthur R. Marshall Loxahatchee …
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