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Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and … their binding sites across multiple genomes. Computational prediction of heterologous expressability: We are developing …

Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … step for many projects at the JGI. The quality of the starting material is one of the greatest predictors …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … to determine coverage of variants depends on project Fungal Minimal Draft Lower coverage short-read whole genome …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … least we can get to talk to you today. Marnix Medema: Yes, absolutely. Dan Udwary: So we have a lot to talk about. I … are protecting the plants against pathogens. So usually fungal or oomycete pathogens. In this case they worked on a …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … actually recognize what’s going on in the DNA, you can make predictions about what kinds of proteins exist in a cell and … to do to understand the systems and the dynamics of the biochemistry that’s happening on a protein level. We also …

Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … genomes. We did comparative analysis. We did structure prediction. And it was amazing. And now you have– just to …

All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to … operations and scientific relevance and quality. … The Fungal & Algal Advisory Committee is chartered to offer …

Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … the fungal genomes Support Vector Machine (SVM)-based prediction of lifestyle based on 6 gene clusters showed a …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … Successful applications will focus on high-risk/high-payoff proposals within the focused topic areas that can be … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … sort of veer off and go into different directions. Brad: Absolutely. You know, my father Richard Moore was a … going to happen. Dan: Tell us a little bit more about that prediction because… So we were just talking to Nancy Keller …

… to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National User Facilities into … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … repositories until the earliest of three points:  (1) publication of the data (including, but not limited to, …