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Secondary Metabolites Program
… Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and … their potential applications in the bioeconomy including biofuels, biochemicals and sustainable agriculture. …
Learn more
FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … on an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range of … provides customized analysis, the JGI also participates in publication of results. …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… I talk about SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my … for thousands of years, but we’d like to start comparing evolution in real time to maybe like hypersaline … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … Wow. It’s all happened so fast. I mean, in terms of human evolution and knowledge, like discovering that the ocean is … the impact of those molecules on survival. We started doing laboratory experiments with fish, trying to see if, first o …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … do some sort of slightly novel chemistry. That’s just how evolution works. So if secondary metabolism is really …
Learn more
Industry Engagement Program
… — with capabilities that had remained largely unknown and underutilized by industry. When Director Nigel Mouncey … joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … computer analysis coupled with liquid chromatography mass spectrometry. We offer accessible, AI-ready large-scale data …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … quickly built up a great body of work, with interesting perspectives on evolution of natural products biosynthesis. I think it will … with Marc Chevrette, a postdoctoral researcher from the laboratory of Jo Handelsman at the University of …
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … are all really closely related things in terms of, like, evolution, in terms of taxonomy– produced really different … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring … .  Many users rely on a multifaceted combination of genomic, transcriptomic, proteomic, phenotypic, … same time, the team is expanding current capabilities in strain engineering and functional assays and supporting new …
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Natural Prodcast Episode 17: Cassandra Quave
… to help encourage and support training, where we’ve done laboratory exchanges. We also recently were fortunate to get … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … mixed powders, my immediate thought was this is going to revolutionize plant natural products work. And I’m always …
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Natural Prodcast Episode 16: Marcy Balunas
… know that that’s ever necessarily like a good description of anyone because chemistry means a lot, especially when … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … was episode 6.] about this. And really his focus was on the evolution of these systems and I understand you’ve worked on …
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