Search

…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … in defense, nutrient acquisition and communication. Studying how these compounds are biosynthesized and their …

Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI …

Biology is currently experiencing a revolution brought on by rapid developments in genomics … types) (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … what was this bacterium, and why did your group want to study it? Marnix Medema: You mean the PhD project that I …

… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … are probably quite familiar with GNPS as a tool, and using molecular network analysis, too, as an early step. That’s …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

Microbes drive critical ecosystem functions and affect global nutrient cycling, … of uncultivated viral diversity, characterization of molecular mechanisms involved in virus:host interaction and … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

… … DAN: You’re listening to the US Department of Energy Joint … is by comparison. We’ll talk about that when we talk about molecular biology.  But um, yeah, so secondary metabolism is … secrete a lot more things than people do…? Although I don’t study people so maybe I’m wrong. But yeah, I mean, because I …

With collaborative user projects, the JGI’s Plant Program delves into … diversity and integrating various data types to explore the molecular mechanisms behind phenotypic evolution. It also … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… … DAN: You’re listening to the US Department of Energy Joint … fungi were transformed. So I wasn’t even thinking of molecular genetics of finding genes when I first started … this, is that I don’t have an awareness of how to go about studying them. Like to me, fungi are, you know, how do you …

… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … was looking to develop new methods for DNA sequencing of microbes. And what kept breaking our methods was these damn …

Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … and storage (from PacBio) Best practices for High Molecular Weight DNA extraction and quality control (from …