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… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … to extract meaningful biological insights from sequence data, employing IMG data and tools for comparative analysis, …

… diversity and metabolic potential, with implications for energy production, environmental sustainability, and … Program combines large-scale, time-series metagenomic data with detailed characterization of model systems to … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is …

SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and ready … have an E. coli strain that we’ve been working on that we sequenced the genome. And it has 17 resistant genes on a …

Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for … must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix …

For accepted proposals, sequencing, synthesis, metabolomics … be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics …

… sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  sequencing … significantly lowering costs. Staff process samples, perform quality checks, and prep libraries for sequencing. They apply Lean Six Sigma practices to …

… of working with our facility. This includes help with: preparing a Statement of Work, completing a formal User Agreement, and ultimately launching the user’s … of samples for sequencing, or the submission of sequencing data for synthesis – the DOE requires that all work …

… provides advanced genomic capabilities, large-scale data and professional expertise to support the global … and resources. Our vision is to lead genomic innovation for a sustainable bioeconomy. ALL PROPOSALS must support the … in doing so enabled the JGI to be the first to publish the sequence analysis of the target chromosomes 5, 16, and 19, …

… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … now, just because of the ways that we can generate data. So, obviously, it’s very apparent to us here at the …

… to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing … understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …

See below for examples of successful Letters of Intent to our … Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared …