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Frequently Asked Questions: Project Management
… The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online … (WIP) interface.    For commonly asked questions about JGI’s proposal calls and proposal submission, as well as … The “User” signing the JGI User Agreement will be an authorized representative from …
Learn more
Natural Prodcast Episode 24: Jackie Winter and SMC
… interviews, but instead it’s two interviews in one. My new co-host, Jackie Winter, has been on a few episodes now, … SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and …
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FICUS-NERSC/KBASE
… of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( … expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in … as part of the FICUS initiative. Proposals submitted to the JGI-NERSC-KBase call do not use the Letter of Intent; rather …
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Natural Prodcast Episode 4: Nancy Keller
… example of probing fungi for natural products and finding new things. And so, really happy to have you here. And … Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, … actually, everything is funding, right, isn’t it? I thank JGI for sequencing a lot of fungi. But the thing with them – …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted … including awards funded through  BER Funding Opportunity Announcements ,  Science Focus Areas  (SFA) opportunities, … and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis …
Learn more
Institutional User Agreements
… of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for … must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … address the DNA Synthesis program. When fully executed, the new User Agreement will replace the active version. For …
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science … provide advanced genomic capabilities, large-scale AI-ready data and professional expertise to support the global … drive biotechnology and biomanufacturing innovation. The JGI contributes to this mission by enabling large-scale …
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User Programs
… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials Status CLOSED CLOSED …
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Natural Prodcast Episode 6: Marc Chevrette
… describe. [ Go here to learn more about Tiny Earth and the JGI’s role in the project by watching Amanda Hurley’s … I worked on a team at the Broad that was looking to develop new methods for DNA sequencing of microbes. And what kept … for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… analogy to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … now, just because of the ways that we can generate data. So, obviously, it’s very apparent to us here at the … changed genome mining over the years, and we talk about a new publication out of JGI in Nature Biotechnology , for …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the … and their roles in the environment, can unlock new avenues for bio-based products and bioenergy crop … the program strives to facilitate the discovery of new bio-based molecules that can drive innovations in …
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Partnerships: Adopt-A-Genome
… a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation … of microbial genomes that have been sequenced by the JGI though not formally analyzed or published.  The purpose … Reach the next generation of genome scientists and recruit new talent for biosciences.  Adopt-a-Genome has: ~20 faculty …
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