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Mission
… scores of microbial species as well as several model organisms and contributing this information freely to the … data, building predictive models for the behaviors and interactions of complex systems, and accelerating …
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Natural Prodcast Episode 15: Katherine Duncan
Quite a lot of people in Europe do this traveling by train inter-railing around countries. And I was actually in … produced by microbes, they’re pretty adaptable to other organisms. And we’ve done that with microalgae. They’re … linking like with like. And so if you know any one of those within that cluster, you can begin to infer the function of …
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Secondary Metabolites Program
… for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in defense, … algae and plants. These compounds are key to organisms' interactions with their environments and with each other, …
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Natural Prodcast Episode 18: A CSP Primer
… for the next few months, you’re going to hear my last interview with my co-host Alison Takemura, who’s moved on … (that’s LBL), the National Lab where JGI is located. And within the DOE is BER, which stands for Biological and … sequenced, or whatever the  equivalent is for more complex organisms, or hundreds of kb synthesized, and so on The …
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Natural Prodcast Episode 5: Brad Moore
You know, at that time, it was just [that] the chemistry of organisms was fascinating to people. And in many ways, the … raised in Hawaii, I love being in the ocean all the time interacting, you know, with organisms in the ocean, because … a sophomore in college, we probably all remember, probably, within the first week of school, you know, our instructor …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… . And then coming up after that, we’ll have a lineup of international scientists who also do genome mining. We’ve … environment. And so we know that lots of different types of organisms make lots of different types of molecules, not … it’s like these molecules can just mediate so many kinds of interactions. And by understanding them, we can promote the …
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An Integrated Dataset to Understand Ecosystem Interaction
… will help identify how different elements of the ecosystem interact and respond to changes in the environment. The … water-quality regulation. Focusing on the rhizosphere and interactions between the trees, microbes and soil chemistry … — illuminating the molecular mechanisms for adaptation within the trees. The data set generated is 25 terabytes in …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of single-cell … methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells … Kyrpides N. C., Woyke T . Giant virus diversity and host interactions through global metagenomics.” Nature 578(7795): …
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Fungal & Algal Program
By sequencing and analyzing the genomes of these organisms, the program investigates the biological … improve understanding of how fungi and algae contribute to ecosystems and industries. The program also explores … fungal genomes from across the Fungal Tree of Life, from an international research team in collaboration with the JGI. …
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Natural Prodcast Episode 22: Alison Narayan
… back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … mean, we found sometimes enzymes that are the most similar within our libraries can have drastically different … is a lot of literature around enzymes from thermophilic organisms where their peak activity is at an elevated …
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Natural Prodcast Episode 2: The Primer, Part 2
… very developed secondary metabolism pathways. Not every organism, at least, has something that’s maybe obvious or … of those pathways come from bacteria that actually live within, say, the sponges or other things. And we know lots … diversity can have similar effects, I think is also really interesting. Because glycosides are shaped so differently …
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Natural Prodcast Episode 6: Marc Chevrette
… to clean it up quite a bit, and the conversation was so interesting that I wanted to include it. This is a … program. Like how – is like Jo just the ambassador of microorganisms in soil and – MARC: That is a perfect way to put … angry with one another, and trying to unpack all of those interactions. You know, that’s what gets me excited. That’s …
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