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A data analysis and coordination center for the human microbiome project
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Natural Prodcast Episode 24: Jackie Winter and SMC
… of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an important one that … having an output where you could make a difference with human health and increasing our longevity and agriculture. … DAN UDWARY: Nothing to be sorry about. Yeah, no, your project was really cool. The vanadium haloperoxidases are …
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Natural Prodcast Episode 20: Brian Bachmann
… back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. First … which includes screening methods, genome mining in cave microbiomes, and using engineered biosynthetic pathways and … where you have to go miles underneath the surface where no human has ever tread And that there’s very, very, very low …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a perfect storm in … they were known as the most toxic molecules, and that human beings know, today, for small molecules. So they’re in …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as … will be the development of tools and infrastructure for microbiome data science, and the development of new … specifically optimized for high-performance computing environments. … KBase is a critical partner in enabling systems …
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New Lineages of Life Group
Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … coding potential to find novel functions that may impact microbiome structure and biogeochemical cycles. Research …
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IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
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JGI Advisory Committees Code of Conduct
Guiding Principles All staff members of the US Department of … Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core values , which guide the … you in support of team science and service for the good of humanity. Sincerely, The JGI Leadership Team : Nigel …
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Natural Prodcast Episode 16: Marcy Balunas
Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. How are you?  MARCY: Am fine. I live in a … and helping to concentrate it. But that’s the next project.  DAN: Thanks.  ALISON: We had talked a little bit … think they’re not sparse nutrients environments at all. The human gut for example. This Hawaiian bobtail squid, it’s …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s … the professor was actually quite enthusiastic about the project and he arranged funding to do it nonetheless from … we, for example, are really interested in metagenomes and microbiomes and figuring out which gene clusters are …
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Fungal & Algal Program
… and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the … dramatically affect plant health. The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, … of  Dysgonomonas hofstadii  DSM 104969 Isolated from a human abdominal surgery wound. V. Torres, et. al.  2025. …
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