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JGI Portals
… developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes … — top-quality genomic data, open to all researchers. … The JGI Genome Portal provides unified access to all JGI genomic … users. It is also a place where the community can upload new data for use by scientists and the public, and provide …
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Microbiome Data Science Team
… approaches in data analysis and interpretation is creating new opportunities for breakthrough discoveries and … resistance. Cell . 184(13):3376-3393 Almeida A, et al. (2020) A unified catalog of 204,938 reference genomes from … Sequencing a Myriad of Type Strains. PLoS Biology  12(8):e1001920 Ivanova N. et al. (2014) Stop Codon Reassignments in …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable … energy and environmental challenges.  Commissioned for the JGI’s 25th anniversary, the JGI mural references dozens of iconic JGI contributions to …
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Informatics Advisory Committee
The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, … the effective management and strategic objectives for the JGI’s data science, informatics and information technology …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… analogy to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … of Energy Joint Genome Institute, a DOE office of science user facility located at Lawrence Berkeley National Lab. You …
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Natural Prodcast Episode 14: Nigel Mouncey
… and head of the Secondary Metabolites Science Program at JGI, and also my boss, Nigel Mouncey. I got him on to talk … natural products for agriculture, and his upcoming new role as the Society for Industrial Microbiology and … also want to take a minute to mention that the JGI’s Annual User Meeting is coming up, August 30th through September …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… interviews, but instead it’s two interviews in one. My new co-host, Jackie Winter, has been on a few episodes now, … Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … needed to do in secondary metabolism in order to help our users. So for those who are familiar with JGI’s IMG data …
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JGI Mural
The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references dozens of iconic JGI contributions to advancing the frontiers of … below to learn about the science depicted. The two-story JGI mural was commissioned for the JGI’s 25th anniversary …
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Natural Prodcast Episode 7: Ben Shen
… schedule for a while. Moving forward, I’m hoping to get a new one out every two weeks. This time, we’ve got a great … think his energy is infectious. DAN: I’ll say up front that JGI recently started collaborating with Ben and his group to … be useless unless you make the invention available to broad user groups. So, I view the project that we are working on …
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Natural Prodcast Episode 19: Bill Fenical
… this an awfully long time ago, and she’s been in her new job for a long time now, but I guess you all might not … things I want to make sure that we talk about. You have a JGI project going with us that we want to talk a little bit … So fortunately, the secondary metabolite component of the JGI, people are interested in this area. DAN UDWARY: I know …
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User Science
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FICUS
The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique opportunity … be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … being lack of relevance to DOE mission areas.  Initiate a new LOI by logging into the   EMSL User Portal  and clicking …
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