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Metabolomics Program
… genes, and proteins. It also enables exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With advanced mass … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome …
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Natural Prodcast Episode 16: Marcy Balunas
… to do an independent study on ethnobotany of some of the plants that people were using for medicines in this very … what we know is they’re quite selective in some way for antifungal activity. They are also, some of them, are … recently published papers was about doing this with human pathogens. And I had an undergrad in the lab who was just …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … mycorrhizal symbionts shuttle water and nutrients to trees; plant pathogens colonize living plants to feed on them.  Across … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Mapping the Earth’s Hidden Fungal Kingdom
… estimated 2–6 million species — dwarfing the diversity of plants. To put this evolutionary timescale in perspective, … fungi remain largely mysterious. Only about 200,000 fungal species have been named. Among those sequenced, … language. Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal …
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A Plant Root Atlas for Tracking Developmental Trajectories
… Cole , a research scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in … with the JGI’s growing efforts in establishing plant and fungal single-cell and spatial transcriptomic technologies, …
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Evolution of a Fungal Gene Expression Regulator
… on the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species of fungi. The Impact Interactions between plants and fungi run the gamut from mutually beneficial to … that can move to another location in the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … natural products of microbial origin is around 30,000 from fungal, and a 40,000 from bacteria. Okay? And among the … product chemistry? BEN:  Yeah. So, I was trained as a plant natural product chemist. When I first started in …
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Natural Prodcast Episode 18: A CSP Primer
… me say that the Joint Genome Institute is a “Department of Energy user science facility”, and so today what you’re … And I think also the quality that we provide. So for fungal and for a lot of our eukaryotic genomes, all our eukaryotic genomes. Fungal plant, algal genomes, a lot of effort goes into generating …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a … through analyzing and harnessing genomic information from plants, fungi, algae, non-medical microbes, microbial …
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Plant single-cell solutions for energy and the environment
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast … in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often … it has a really interesting biosynthetic pathway because fungal genes are cool. And if you like fungal genes, you …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have … of weird growths on livestock due to you know, bacterial or fungal infections. Yeah, okay. So he identified these things …
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