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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal … 25  Dothideomycetes species, and also provides more information about speciation events. … The work conducted by …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s … drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, …
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Igor Grigoriev
… the pharmaceutical industry. He holds joint appointments as Fungal and Algal Program Head at the DOE Joint Genome … protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 fungal genomes … Daphnia pulex .  Science. 2011; 331: 555-561. Ohm RA et al. Formation of mushrooms and lignocellulose degradation …
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The Soil Blooms Green
Every fall, a mysterious green growth appears on top of farmers’ fields: a microbial community that might be quietly improving the soil. Penn State researchers Mary Ann Bruns and Terry Bell are digging in to understand how. …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** … target in Q2 is due to planned upgrade of the Laboratory Information Management System (LIMS) and temporary shut down …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … episode is our conversation with Nancy Keller, a fantastic fungal natural products researcher from the University of … genome. The genetics was slower to begin with. So transformation, or manipulation of the DNA of genes and bacteria, …
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Natural Prodcast Episode 1: The Primer, Part 1
… that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe … why we want to do this. And also to provide a little more information and context for people who might possibly be … where this happened have a tendency to be susceptible to a fungal infection of rye grain – a specific fungus, Claviceps …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help … other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act … of the key community participants and enabling future metagenomics studies.   … The sequencing project was funded by …
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Natural Prodcast Episode 14: Nigel Mouncey
… for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took a little break, but I’m hoping that from … about what are they doing. And so it’s really functional genomics. And there’s a lot of sequencing based approaches, … National Lab. You can find links to transcripts, more information on this episode and our other episodes at  …
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … at the University of Washington there’s a guy named Peter Greenberg , and in the medical school in the Department of … So I think the classical example yeah, is biofilm formation. So you’re producing different extra polymeric …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … of whole genes,” Kellogg agreed. “Getting that information is hard. There’s a good reason nobody’s done it; … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is …
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