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Calculating the Costs of Multiple Switchgrass Gene Copies
… have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its habitat range. But at what cost?  A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … More genome copies in switchgrass leads to increased climate flexibility …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … antiSMASH, and I thought that was really a nice example of teamwork and combining things that another group has …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there, and welcome to the … a little bit more of a problem. And so there was a major effort to try to figure out ways to get around this. Often …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … is clearly a winner. But the problem is not lack of effort. We just don’t know how to discover. So this goes … and we have a department, we have divisions, we have fields called organic chemistry, right? But today in many …
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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … eukaryotic genomes. Fungal plant, algal genomes, a lot of effort goes into generating these data sets. There’s a lot … if you don’t have a track record yet, you need to build a team around this project, right? So you need to have …
Learn more
JGI Advisory Committees Code of Conduct
… Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to … To uphold Berkeley Lab’s enduring 90-year legacy of team science—bringing science solutions to the world—and to …
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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill Fenical from Scripps … survival. Those molecules, over evolutionary time, become targeted to certain biological systems in the target … In this episode, Natural Prodcast talks to the legendary Prof William Fenical of Scripps Institution of Oceanography in …
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Team Science Reveals Important Protein in Poplar
… Scientists at Brookhaven National Laboratory (BNL) led a team that  identified a protein , PtrbHLH011, within poplar … Described as the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of Energy … land, drought and disease.  Summary In the 1970s, the DOE  targeted poplar as its primary wood crop for bioenergy …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … that will help solve energy and environmental challenges. Switchgrass is a native, shrubby grass that can grow … an important species whose complex genomes are helping breeders understand how they can boost crop productivity and …
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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal … microorganisms, by sequencing large populations of bacteria and archaea in their natural environments using …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, … to soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene regulatory networks governing terpenoid-mediated … plant environment interactions to enable advanced bioenergy crops …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there. This is Dan again, … ALISON: Yeah, so that was a lot of like synthetic chemistry effort to create a bunch of novel compounds that actually …
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