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… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of … (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … But um, yeah, so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. … synthase kind of system, like, maybe this bacteria just makes fatty acids in a weird way. Or maybe it’s a secondary …

… Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … specifically for my audience. But, yeah. So, Tanja, what makes a research project a good fit for working with the … not just one data set that serves the PI, and PI writes one paper and that’s it, and then the data set is really not …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint …

… See below for a list of Frequently Asked Questions about our proposal … Review the list of open calls ; click on the call link to see specific …    JGI staff are not eligible to submit proposals, or to be listed as co-PIs or collaborators.   JGI’s standard User … on our YouTube channel as well as in this episode of our Genome Insider podcast.  You can also contact …

… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and … on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to improving our …

… outputs for each product. For custom requests not on this list, or to discuss experimental design for a proposal, we … assembled to less than 5kb in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …

… The Genome Insider podcast brings listeners into the science that the JGI makes possible. Each episode, host Menaka Wilhelm interviews …

… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … relationships and to provide valuable reference genomes in under-populated areas of the tree of life, as reference genomes are critical to serve as phylogenetic anchors for …

… factors and determine their binding sites across multiple genomes. Computational prediction of heterologous … composition, metabolic similarity & compatibility, and signatures of horizontal gene transfer. …

… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … with genomics data.  This is a web-based service returns a list of scored reaction and gene matches associated with metabolites and a list of scored metabolite matches associated with genes.  …