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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … those genes were actually tested in the 2011 paper. In 2015, the study’s dataset became material for a hands-on … You can learn more about how JGI data supports higher education in this JGIota , a Genome Insider podcast …
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A More Intuitive Phytozome Interface
… updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, gene … We hope to add several of them soon, but don’t yet have a timeline for their restoration. They include Jalview (for …
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Game On: High School Students Drive Everglades Metagenomics Study
… a second year A-Level Advanced International Certificate of Education (AICE) Biology class at Florida’s Boca Raton … devices, then planned and collected from 4 sites with 5 replicates. They extracted the DNA from the soil with … of their efforts during the Energy, Earth and Environmental Education (E4) community-building workshop at the  2019 …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… of plants have resulted in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her … were generated, though the final analyses focused on 598 individuals. Schmutz and his team assembled and … and assembled the green millet “pan-genome” (a set of 51,000 genes that represent all the genes that are present …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… above. Described as a “river of grass” that stretches some 580,000 square miles across southern Florida, they encompass … teaches the A-Level Advanced International Certificate of Education (AICE) Biology class at Boca Raton Community High …
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Marine Microbe Contains Multitudes
… to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have wondered, how can SAR324 … Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long … ecotypes dwell in the sunlit upper waters (above 200 m, or 656 ft), and have genes to support a photoheterotrophic …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… JGI’s help. Additionally, the Marsarchaeota comprise 20-50 percent of the iron-oxide microbial mat communities in … the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The work was supported by Pacific Northwest … National Science Foundation Integrative Graduate Education and Research Traineeship Program, and Montana …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… than expected. The transcriptome data had suggested about a 50/50 split between fungal and bacterial enzymes. Yet, they … work was supported by the Czech Science Foundation (18- 25706S and 20-02022Y), by the Ministry of Education, Youth and Sports of the Czech Republic …
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Trent Northen
… Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to … in Metabolomics, The Scripps Research Institute Executive Education, UC Berkeley Haas School of Business DOE … 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. DOI: 10.1126/sciadv.adg7888 …
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Steven Wilson
… Education …
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Atif Shahab
… Education …
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Hiroshi Otani
… H, Udwary DW, Doering DT, Mouncey NJ. Cytochromes P450 involved in bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005. Otani H, Udwary DW, Mouncey NJ. Comparative and … Education …
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