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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers … platform enables users to validate hypotheses generated from mining genomic data by designing and assembling … up to ~150 Kb in length  Pooled libraries such as sgRNA, promoter or MoClo assemblies … Check out our …
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FICUS
… across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly describing the project … technologies available at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with …
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Natural Prodcast Episode 11: Marnix Medema
I talked about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, … we get to present our conversation with Marnix Medema , from Wageningen University in the Netherlands. Marnix is … a pipet again except for, of course, some cases when journalists come when they want to see you handle a pipet for …
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Natural Prodcast Episode 7: Ben Shen
This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute in Jupiter Florida. This … I’m very happy to talk to you. And so this is the third international meeting on natural products, but as a new, I call … because – mainly it’s due to the emerging technology on DNA sequencing and synthetic biology. But also the …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find … . And then coming up after that, we’ll have a lineup of international scientists who also do genome mining. We’ve got a … wise maybe, what genome mining is, then, is looking at DNA sequence and trying to find the things that you want to …
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Partnerships: Myco-Ed
… selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ iNaturalist … the Arizona Genomics Institute where high molecular weight DNA is extracted from samples, which is then sent to the JGI … comparative analysis, and distribution of fungal genome datasets. It includes JGI-sequenced and publicly available …
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Natural Prodcast Episode 22: Alison Narayan
… we have our conversation with Professor Alison Narayan, from the University of Michigan. I hope she’ll accept this … niche in chemical enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical capabilities … because I have this question, we have this discussion internally in my group quite frequently. OK, so imagine this …
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An Integrated Dataset to Understand Ecosystem Interaction
… processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as … metagenomics, scientists were able to analyze the DNA of microbes living around the tree roots in the … integrated dataset enables genes-to-ecosystems research … Datasets … Datasets … From our partners …
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Mission
…   The JGI provides integrated high-throughput sequencing, DNA design and synthesis, metabolomics and computational … to these challenges.     Our homepage video includes external footage from:  University of Delaware Laura.Selbmann©PNRA. All the …
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Understanding Wildfire Recovery, Starting in Soil
… in Nature Microbiology , went a step further, using both DNA and messenger RNA (mRNA) sequencing to identify those traits that have … and Coniochaeata lignaria on MycoCosm Data portal … Datasets …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book … While most organism’s genetic information is encoded in DNA, with RNA delivering the instructions inside DNA to the … The team used all the publicly available metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & …
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Natural Prodcast Episode 20: Brian Bachmann
… our interview this week is with Professor Brian Bachmann from Vanderbilt University’s Chemistry Department, where he … which was a very early genome mining company, back when DNA sequencing of natural product pathways was hard and … organisms in ultra minimal media. So you could take International Streptomyces Protocol media number 2, ISP2, and …
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