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The Secondary Metabolism Collaboratory encourages user engagement. The … gene clusters (BGCs.) As reported in the recent Database issue of the journal Nucleic Acids Research , … using multiple commonly used sequence analysis tools is a means of expediting BGC and biosynthesis …

… collaboration with partner organizations such as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.        … Learn more about our work at the …

Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National … (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …

… provides advanced genomic capabilities, large-scale data and professional expertise to support the global … in studies of complex biological and environmental systems. We optimize our service to the community through … the bioeconomy. Gain a genome-level understanding of plant metabolism, physiology, and growth to develop new bioenergy …

… using these together along with all of our computational tools to really build out much more of an integrative … work. And I think as we understand more about regulatory systems that will also help us predict which hosts might be … heard me speak recently have heard me talk about the new data portal that we’re building. And I’ve been eager to …

… and using engineered biosynthetic pathways and enzyme systems to do synthetic analoging of some really complex … a postdoc and went to industry to see what they had, what data they had. DAN UDWARY: And they had a lot of data for … an undergraduate and not succeeding and still using all the tools from mechanistic enzymology to natural product …

… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of … step, numerous genes for antibiotic resistance and secondary metabolism would have been incorrectly attributed …

… fungal and algal pangenomes, and integrate multi-omics tools to enhance functional studies. These efforts seek to … understanding of how fungi and algae contribute to ecosystems and industries. The program also explores … sampling of fungi, laboratory analysis and genomics data exploration. … The Mycocosm web portal provides data …

Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there. This is Dan again, … DAN: Well, it is and it isn’t. It depends on different systems of secondary metabolism and the things that are in … probably been since the last decade. We have a lot more data. Obviously, there’s been a lot of sequencing going on, …

… across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s … Environmental Sample Archives, Applying JGI and EMSL Omics Tools introduces the NEON resource, a network of field …

… (meta)genomic, (meta)transcriptomic, and functional genomic data and serving them to users via the Integrated Microbial … Genomes group is focused on:  Developing state-of-the-art data processing and analysis pipelines for the interpretation of microbiome omics data Developing forward-looking strategies for the …

Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA Synthesis Science Programs … draw from the infrastructure of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant …