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Natural Prodcast Episode 9: Roger Linington
Bill Gerwick’s lab and doing research in Panama through support from the ICBG training program, which stands for … or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … we’re now very much – we’re interested in how we can build tools which will let us see the whole landscape of natural …
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Who We Are
Laboratory. The JGI consists of around 280 researchers and support staff in the Integrative Genomics Building in … Systems Biology Knowledgebase and the National Microbiome Data Collective.        … Learn more about our work at the …
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User Programs
… calls and other opportunities to work with the JGI … User Support …
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FICUS
… across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s … Environmental Sample Archives, Applying JGI and EMSL Omics Tools introduces the NEON resource, a network of field …
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Science Programs
The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists … approaches for and with users, and create computational tools and resources for them. Their concerted efforts help …
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Special Initiatives & Programs
… provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded … and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis … science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on an …
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Natural Prodcast Episode 18: A CSP Primer
BER also provides us guidance on what kinds of research to support and conduct. I already told you what a CSP is, but … did those sequences go? Like, what are the other scientific tools we offer people? TANJA WOYKE: Yeah. Also a really good … algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the …
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Natural Prodcast Episode 15: Katherine Duncan
… the idea of taking all the different natural products data that there is and putting things, coalescing them, so … basic questions that we can only really address with bigger data sets and integrated data sets. So yeah, in terms of, I … that I’ve appreciated since starting my own group is these tools, in terms of looking at the chemistry produced by …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of … by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of …
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Operating Expenses
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JGI Portals
Our data platforms are a key resource for the broader scientific … and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … The JGI Genome Portal … unified access to all JGI genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI …
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Natural Prodcast Episode 24: Jackie Winter and SMC
SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … of always working on natural products but just different tools and how to really access and manipulate these pathways … our users. So for those who are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a …
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