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How to Submit Sequencing Samples
… DNA extraction and quality control (from PacBio) 2) Review guidelines detailing quantity and quality requirements Please review the appropriate guidelines detailing the quantity & quality requirements for samples submitted to the DOE JGI. DNA Preparation Guidelines RNA Preparation Guidelines User Guide for BULK …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … effort, an international consortium recommended specific guidelines and best practices for characterizing … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of …
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FICUS-NERSC/KBASE
… of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly … sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on a …
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User Advisory Committees
… Berkeley National Lab’s (Berkeley Lab’s) core values, which guide the relationships we nurture in our workplace and seek … effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) …
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The JGI Leadership Team
… talent management, and convening of advisory committees to guide the direction of programs and initatives to enhance …
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Leadership
… talent management, and convening of advisory committees to guide the direction of programs and initiatives to enhance …
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Partners
… Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …
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Logos and Templates
… The JGI Style Guide offers tips on JGI logo usage - please follow these guidelines. Logos JGI logo – stacked JGI logo – horizontal …
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Natural Prodcast Episode 15: Katherine Duncan
… the idea of taking all the different natural products data that there is and putting things, coalescing them, so … basic questions that we can only really address with bigger data sets and integrated data sets. So yeah, in terms of, I … that I’ve appreciated since starting my own group is these tools, in terms of looking at the chemistry produced by …
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FICUS
… across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized …
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Natural Prodcast Episode 11: Marnix Medema
… center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, … efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells …
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Protocols
… by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA …
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