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The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique opportunity … across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … Environmental Sample Archives, Applying JGI and EMSL Omics Tools introduces the NEON resource, a network of field …

With collaborative user projects, the JGI’s Plant Program delves into the … understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene …

… or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … we’re now very much – we’re interested in how we can build tools which will let us see the whole landscape of natural … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You …

The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by … available genomes from three domains of life. It provides tools for analyzing the functional capability of microbial …

Software Looking for information on our software, including BBTools ? Click to find that on our archive site.  …

… of a successful sequencing project. It is imperative that users properly assess DNA or RNA mass prior to shipment to … DNA extraction and quality control (from PacBio) 2) Review guidelines detailing quantity and quality requirements … GenTegra RNA Preparation Procedure … 1) Complete Sample Metadata form Sample metadata is collected via spreadsheet or …

Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the … of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly …

Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology … (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close partnerships with other user facilities enable the ability to leverage their …

… by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and … characterization methods, in addition to bioinformatics tools to elucidate phage function in this tripartite … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …

… that the Joint Genome Institute is a “Department of Energy user science facility”, and so today what you’re going to … did those sequences go? Like, what are the other scientific tools we offer people? TANJA WOYKE: Yeah. Also a really good … algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the …

CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic …