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… Systems Biology Knowledgebase and the National Microbiome Data Collective.    … other relevant organisms. We provide access to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics through its … and contributing this information freely to the public databases. In 2004, the JGI established itself as a national …

… the idea of taking all the different natural products data that there is and putting things, coalescing them, so … basic questions that we can only really address with bigger data sets and integrated data sets. So yeah, in terms of, I … that I’ve appreciated since starting my own group is these tools, in terms of looking at the chemistry produced by …

… Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …

… cells of the uncultivated SAR324. The constellation of data gave the team unprecedented resolution to study the … were also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated Microbial Genomes … SAR324 on IMG/M Data portal …

… SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … of always working on natural products but just different tools and how to really access and manipulate these pathways … our users. So for those who are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a …

… CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic …

… by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and … characterization methods, in addition to bioinformatics tools to elucidate phage function in this tripartite … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …

… technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only accessible via Phytozome, the … — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief Informatics …

… did those sequences go? Like, what are the other scientific tools we offer people? TANJA WOYKE: Yeah. Also a really good … algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the … the assembly, the curation, QC, annotation of these data sets. For our eukaryotes, in addition to sequencing the …

… much I actually can learn just by really digging into the data and understanding what’s going on there. And now, … of searching the internet, searching literature, and making databases. Because that’s what I noticed is really a … more into the meta genome mining. We started to build the tools for natural product researchers that easily can …

… Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value … implementation of machine learning approaches and AI based tools to carry out explorative analysis. … rapid processing and analysis of large amounts of genomic data. In particular we focus on the integration and …

… train students and professors in laboratory techniques and data analyses compile original data for improving fungal genomic resources empower students … fungi, sterilize tissue, isolate genes and more. The metadata then goes into iNaturalist. Myco-Ed has:  ~50 lineages …