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Natural Prodcast Episode 16: Marcy Balunas
… tell us about this squid-microbe relationship. Or is it a microbial community with microbial community relationship?  MARCY: Yes. So I would … of these. And so Spencer and his group have done the microbial profiling for what’s in there. It’s a fairly well … on increasing computational skills among biologists JGI CSP Proposal: Metagenomic mining of natural product …
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JGI Portals
… Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic … provides tools for analyzing the functional capability of microbial communities based on their metagenome sequence, in the … with functional annotation, taxonomic classification, and microbial host predictions.  …
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Single Cell Research Group
… in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … Woyke T ., Doud D. F. R., Schulz F. The trajectory of microbial single-cell sequencing. Nat Methods 14(11): … T . Insights into the phylogeny and coding potential of microbial dark matter. Nature 499, 431-7 (2013). Hess M., …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been important in early Earth … applied to samples collected from acidic iron-oxide microbial mats in Yellowstone National Park over time, … comprise 20-50 percent of the iron-oxide microbial mat communities in the 60-80°C temperature range. The discovery …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… approved through the annual  Community Science Program (CSP) call of the U.S. Department of Energy (DOE) Joint … a small-scale white paper focused on duckweed through the  CSP New Investigator call . It is the first project to have … The work builds upon a pilot project to sequence antimicrobial-producing strains. Established by Handelsman, Tiny …
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JGI on the 2021 Highly Cited Researchers List
… Congratulations to the 2021 Highly Cited Researchers at the JGI! They are among … a series of webinars featuring aspects of the Integrated Microbial Genomes & Microbiomes (IMG/M) Nikos Kyrpides was … a JGI Engagement Webinar on How to Successfully Apply for a CSP Proposal. She also co-organized the NeLLi 2021 …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … By sequencing the millet rhizosphere and endosphere communities both with and without the shrub’s presence, … to thrive in drought conditions. The proposal targets the CSP focus area in plant microbiomes, as well as those in …
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Approved Proposals
… previous fiscal years for our Community Science Program (CSP) as well as the Facilities Integrating Collaborations …
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JGI announces 2023 CSP Functional Genomics awardees
… genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that …
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FICUS
… on an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range … samples of the spatial, temporal, taxonomic (environmental, microbial, plants, invertebrate, and vertebrate), and …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… pathways, which led her to a successfully funded JGI CSP project. And we also got to talk about work at her … outreach program to get kids interested in microbiology and microbial chemistry. All good stuff, and I hope you enjoy … Yeah, so that's a new JGI project. Just came out from a CSP this year. BETSY PARKINSON: Yes. DAN: So how long do you …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working … development enrichment activities. For some students in the 2021 cohort, this was their first internship experience, … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes …
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