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Natural Prodcast Episode 7: Ben Shen
… people all over the word who have a common interest, united by natural products, DAN: You guys have put together a … penicillin from the fungal species – probably told us that fungi could be very productive sources for, say, biological … national resources. So, you may know the so-called Nagoya protocol, which prevents taking bio-resources from the native …
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Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution
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Natural Prodcast Episode 3: The Primer, Part 3
… term you prefer. In this episode we’re going to finish up by talking about the modern, post-golden age history of … you want to learn more, then I highly recommend David Hopwood’s book called  “Streptomyces in Nature and Medicine.” … So DNA might be the installation disk you get for your software. A CD ROM. ALISON: I feel like you’re dating …
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Natural Prodcast Episode 2: The Primer, Part 2
… bacterial sacred metabolite, and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, … we don’t recognize, because the only way to find things is by comparison. We’ll talk about that when we talk about … They might have enough nutrients, but they might want to protect those nutrients with antibiotics. They might need to …
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Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi
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Comparative Transcriptome and Secretome Analysis of Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium▿ †
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From Competition to Cooperation
… lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were … (mycorrhizae), and particularly how fungi that feed on decaying plant matter (saprotrophs) have transitioned to the symbiotic lifestyle. The … the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems …
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Partnerships: Adopt-A-Genome
… of the claimed genome sequences. This opportunity, provided by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or published.  The … analysis. IMG/M user interface is designed for use by microbiologists to quickly bridge the gap from sequence …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… of this is based on a really great paper that came out in 2020 where this is all explained in detail, so if you’d like … usage. And I was recently challenged on that on Twitter by Francisco Barona-Gomez. And so he is here to, at least, … be the amino acid that is relevant for the synthesis of proteins, and will more often end up in the active site of an …
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How Filamentous Fungi Sense Food
… model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley … The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall … used in the biotechnology industry to produce enzymes, proteins, and other chemicals. Summary Filamentous fungi are …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… to the user. Most users of the Molecular Foundry work side-by-side with our scientists at Berkeley Lab. Access to the … basic lab supplies, office supplies) is supported by the Foundry. If a user’s project requires consumables … For projects involving computational work with Dr. Blaby-Haas to model, predict, and understand nanoscale …
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Laccase and Its Role in Production of Extracellular Reactive Oxygen Species during Wood Decay by the Brown Rot Basidiomycete Postia placenta▿ †
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