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… at the JGI; and overview of the Community Science Program (CSP). A crucial job of the committee is to take the input from the CSP Proposal Study Panel on prioritization of CSP projects and, with concurrence from the DOE Office of …

… not enough time and money. I mean, we have a huge marine fungal project in collaboration with Bill Fenical at … has been doing work in secondary metabolism. The very first CSP I ever worked on back in Brad’s lab, we talked about it … a BGC fragment can be useful in some way if you’re doing comparative analysis. We want to make sure we had everything …

Yeah, so any metabolite, produced by bacterial or fungal metabolism by microbes, will have a functional role. … a very unique on one compound. So cahuitamycin is an antifungal that will actually protect the fungal farms from … to find any new genomes, new areas or regions or loci, that encode for new, truly chemical dark matter BGCs. That’s the …

… the pharmaceutical industry. He holds joint appointments as Fungal and Algal Program Head at the DOE Joint Genome … Evol . 6(7):965-978. Grigoriev et al (2021) PhycoCosm, a comparative algal genomics resource.  Nucleic Acids Res. … of natural products. Proc Natl Acad Sci U S A. 118(18):e2019855118. Miyauchi et al (2020) Large-scale genome …

… other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act … work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s Francis Martin that contributed … Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: Deep-sequencing of ecologically relevant …

DNA Synthesis and Single-Cell Genomics Vivian Ng Fungal Genomics …

… to determine coverage of variants depends on project Fungal Minimal Draft Lower coverage short-read whole genome … sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard Draft Whole genome shotgun sequencing using … scientific merit Assembly, annotation ( Mycocosm ) 256/404 Fungal Resequencing SNP and short indel calls, rearrangement …

The Community Science Program (CSP) provides the scientific community at large with access … of disciplines. Three calls fall under the umbrella of our CSP: The Large Scale call is for expansive projects that …

Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a … to identify data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced … enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward …

… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a tree falls in the … said, the 1000 Fungal Genomes project, together with other CSP projects, had sequenced over 2,000 fungal genomes. The …

… previous fiscal years for our Community Science Program (CSP) as well as the Facilities Integrating Collaborations …