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Frequently Asked Questions: Proposal Submission
… in. All proposals must be written in English. … The CSP and FICUS calls are open to both domestic and … from any institution type and at any career stage. Generally, most users are able to work with Berkeley Lab.  … Agreement must be signed before work can begin, and all CSP proposals are subject to JGI policies on Data Release …
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Natural Prodcast Episode 9: Roger Linington
America brought to the UK? ROGER:  Yeah, it’s difficult to generalize, of course, but I felt overall that the British … my perspective, JGI has a large database of biosynthetic gene clusters and biosynthetic gene cluster fragments, and all kinds of other crazy things. …
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Natural Prodcast Episode 13: Francisco Barona Goméz
At the end of the day, all the content produced by microbes the result of millions of years of evolution. And … the active site of an enzyme. So there is no promiscuity, generally speaking, in primary metabolism. Nevertheless, … symbiont, for example, of an ant. So these are very stable interactions that have been evolving for 300 million years, …
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Natural Prodcast Episode 6: Marc Chevrette
… was looking to develop new methods for DNA sequencing of microbes. And what kept breaking our methods was these damn … that can’t live without their host. They have no extra genes hanging around, they still dedicate 20-30% of their … angry with one another, and trying to unpack all of those interactions. You know, that’s what gets me excited. That’s …
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Natural Prodcast Episode 15: Katherine Duncan
I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. Dan … what’s important in terms of the chemistry produced by microbes. And by what’s important, I mean, like, where … in Antarctica on a ship. Yeah, so I went to Antarctica in 2018 as a participant in Homeward Bound 2, last year as …
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Natural Prodcast Episode 10: A Primer on Genome Mining
ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … want to explain that to someone who doesn’t know much about genetics or anything else, science wise maybe, what genome … it’s like these molecules can just mediate so many kinds of interactions. And by understanding them, we can promote the …
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Community Science Program
The Community Science Program (CSP) provides the scientific community at large with access … of disciplines. Three calls fall under the umbrella of our CSP: The Large Scale call is for expansive projects that … the completion of a project, the JGI makes the assemblies, gene annotations, and analyses available to the community at …
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Viral Genomics Group
Microbes drive critical ecosystem functions and affect … of green sulfur bacteria with long standing virus-host interactions. ISME J.   15 , 1569–1584 Roux, S. et al. …
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Scientific Advisory Committee
… at the JGI; and overview of the Community Science Program (CSP). A crucial job of the committee is to take the input from the CSP Proposal Study Panel on prioritization of CSP projects and, with concurrence from the DOE Office of …
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Mission
Science Program, characterize organisms (plants and microbes) relevant to the DOE science mission areas of … data, building predictive models for the behaviors and interactions of complex systems, and accelerating … are at the core of many environmental processes, and the genetic makeup of microbial species and communities forms …
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Natural Prodcast Episode 12: Nadine Ziemert
… product reports on the evolution of genome mining and microbes with Mohammad Alanjary and Tilmann Weber to be a … of it. So it wasn’t only chemistry or only biochemistry or genetics. It was also ecology. It was also evolution. It was … I could see a certain time span within these biosynthetic gene clusters. There’s gene fusion going on, and then I …
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Natural Prodcast Episode 17: Cassandra Quave
… bioprospecting vs biopiracy, early stage drug discovery in general, and a possible data-driven future for plant natural … a really interesting field that I guess– so I’m more of a microbe guy, and as is Alison, or not a guy, but [LAUGHS] a … better could be perhaps to take deeper looks at the interactions that organisms have, not just within the same …
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