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Plant Program
… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and … supports the development of next-generation biofuels by studying perennial grasses and fast-growing trees as …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . … And these were not in natural products, these were in studying regulatory mechanisms of, first, E. coli and then … in an obvious way. NIGEL MOUNCEY: We did a little bit of metagenome screening work and did find related clusters. But …
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Metabolomics Program
… Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular level. … metabolites, genes, and proteins. It also enables exploration of energy and nutrient exchange, as well as microbial and …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion Episode” of Natural … in natural products as an undergrad. So for me, it was studying sort of the interface of chemistry and biology … the rest of the archaea and fungal genomes and then work on metagenomes. So yeah. So we’ve taken every public sequence …
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Natural Prodcast Episode 1: The Primer, Part 1
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there, and welcome to the first … a User Facility means that scientists from all over the world bring us big problems related to energy and the … I’m definitely seeing why this is such an important area to study. Okay, what’s your third story?  DAN: The third story …
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Natural Prodcast Episode 18: A CSP Primer
… round of episodes. If you stick around for the next few months, you’re going to hear my last interview with my … the Joint Genome Institute is a “Department of Energy user science facility”, and so today what you’re going to hear … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level … at the JGI. The quality of the starting material is one of the greatest predictors of a successful sequencing …
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Plant Microbial Interactions Group
… associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated … partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and spatial … to better understand the plant-associated terrestrial world. Research Team    …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for … funded through  BER Funding Opportunity Announcements ,  Science Focus Areas  (SFA) opportunities, and the  Office of … Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. … hold me accountable and yell at me if I slip again. My JGI coworkers are way too nice to yell at me, so that’s gonna be … just now switching from intermicrobial interactions, studying intermicrobial interactions by imaging interactions …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… it. I’m keeping to my schedule. This should be coming out on the first Thursday of the month, just like I promised. … some of the biosynthesis, getting to get the best of both worlds because I feel like there's some areas where chemical … know what CAPS is. [Note: Counseling and Psychological Services (CAPS) at Purdue.] We've been able to bring …
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Natural Prodcast Episode 7: Ben Shen
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hello, and welcome back for Episode … of listeners downloading this from countries all over the world – as many from outside the US as inside – and so, … the production of the natural product. So that was my PhD study, and then towards the end of my PhD study, then …
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