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Partnerships: Adopt-A-Genome
… talent for biosciences.  Adopt-a-Genome has: ~20 faculty from institutions across the country Efforts in ongoing … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of … skills necessary to extract meaningful biological insights from sequence data, employing IMG data and tools for …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified …
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Viral Genomics Group
… of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these … to identify, filter, cluster, annotate, and bin viruses from metagenomes. mSystems 9:e00888-24. … about an Uncultivated Virus Genome (MIUViG). Nature Biotech. 37, 29–37. https://doi.org/10.1038/nbt.4306 …
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From Competition to Cooperation
… had ever been done before to look at how multiple forest fungi have independently evolved to establish symbiotic … with plants (mycorrhizae), and particularly how fungi that feed on decaying plant matter (saprotrophs) have … , the work was led by a consortium of researchers from the French National Institute for Agriculture, Food and …
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Comparative genomics of xylose-fermenting fungi for enhanced biofuel production
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Engineering of holocellulase in biomass-degrading fungi for sustainable biofuel production
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JGI Portals
… for amplifying the JGI’s impact. Data generated from a single investment will be reused for further … Book a session via the appointment calendar for technical help, feedback or a guided walk-through of the new … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… I was pretty green at the time and had some really tedious technical problems with editing the recording. But I … or siderophores or lipids are more or less quite straightforward, at least in my mind, that you can really … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …
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Natural Prodcast Episode 12: Nadine Ziemert
… Prodcast. And it’s our conversation with Nadine Ziemert from the University of Tübingen in Germany. Like me, she’s a … a marine actinomycete bacterium. So they look kind of like fungi but also make these mycelia. They kind of look like … talking about what it would take to expand on the existing technology. And a lot of that was around chemical …
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex … can more easily convert plants into carbon-neutral biofuels . What’s more, many natural products have potential … making. So, Trent Northen , head of the JGI Metabolomics Technology Group, with scientists Ben Bowen and Katherine …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant roots. Plants … expression in both plant cells and fungal cells. Using a technique called single nuclei RNA sequencing, the …
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How Filamentous Fungi Sense Food
… The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall … looking to improve the industrial production of sustainable biofuels and bioproducts. Filamentous fungi are also being used in the biotechnology industry to produce enzymes, proteins, and other …
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