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The User Support Analysis group provides computational analysis for new technology development and …

… preferences A 10″ Simple Rules” article on increasing computational skills among biologists JGI CSP Proposal: …

… antiSMASH has been sort of a good aggregator of different methods that people use when they’re doing homology … set of MAGs to date. Here, at JGI, we took more than 10,000 metagenomes, many of which were sequenced at JGI, and some … TAKEMURA: –just give me a few examples of where these metagenomes came from? DAN UDWARY: Oh, yeah. These things …

… microbes , scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell … amplification at a large scale. Summary The two most common methods for collecting genomes from microorganisms are …

… plant and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy Research …

… compounds. To support users, our efforts include developing computational tools for predicting biosynthetic gene … and determine their binding sites across multiple genomes. Computational prediction of heterologous expressability: We … host to express their BGC(s). This is based on extensive computational analyses of BGC size and complexity, BGC …

… of plasmids automatically identified from genomes, metagenomes, and metatranscriptomes. It provides rich data … of Uncultivated Viral Genomes, derived from genomes, metagenomes, and metatranscriptomes, with over 15 million …

Machine learning methods were applied on sequenced fungal genomes to classify …

… them. And so, I spent a number of years trying various methods, back in the old days, to figure out how they’re …

… anyway, to anywhere tackle that. So you’ve got to do it computationally. Right? So where do we start with that? … spectrometry hardware, software, new developments in NMR methods, ultra fast methods for acquisition. Things like this new SMART …

… for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. … gets analyzed. And in a way that helps the PI, I think. For metagenomes and microbial genomes, in part because of the … of those individuals. Also, if you need a “Materials and Methods” section, we can provide that information as well. …