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How to Submit Sequencing Samples
… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and … QC Protocol JGI’s Total RNA Sample QC Protocol JGI’s Small RNA Sample QC Protocol DNA Extraction 101 : tips, kits, …
Learn more
Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses … viruses and mobile genetic elements. Beyond exploring and characterizing microbial diversity, work in the … resources that support user analysis of biogeochemically-relevant pathways, enabling modeling of microbiomes …
Learn more
Natural Prodcast Episode 13: Francisco Barona Goméz
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … products systems. This conversation came about because he challenged me on my use of the term “secondary metabolism.” … I think the important thing to remember is that, thanks to genomics, we now know that it is very hard to find stuff …
Learn more
Publication Policy
… communication norms around JGI contributions, ensure that all contributors to a research project are appropriately … recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … collaborative nature of the project. Journal policies typically expect authorship to include all those contributing …
Learn more
Natural Prodcast Episode 22: Alison Narayan
… Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society … of the more normal kinds of natural products people we usually talk to. She’s a chemist, and describes her work as … in a route towards many different compounds in the same family. And so that you want it to have some promiscuity in …
Learn more
JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability … genomes and metagenomes — top-quality genomic data, open to all researchers. Book a session via the appointment calendar …
Learn more
Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … genomes that have been sequenced by the JGI though not formally analyzed or published.  The purpose of the program is … to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … natural product which is a liver toxin when humans accidentally eat it, but it has a really fun and interesting … in them. And so far people looking at that chemistry have focused on how their microbiome – how bacteria living with …
Learn more
Natural Prodcast Episode 17: Cassandra Quave
… is Professor Cassandra Quave from Emory University, with joint appointments in the School of Medicine and College of … she’s written a book about her life and her science, called The Plant Hunter , and I have to say it’s so awesome! … discovery. It’s also the kind of book we can hand off to family members and friends as a way to introduce them to the …
Learn more
Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge capabilities to help advance their science by … Deputy of Genomic Technologies …
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Metabolomics Program
… JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … metabolomics with genomic data to gain insights into how small molecules function within plants, microbes, and …
Learn more
Institutional User Agreements
… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or … data for synthesis. This agreement, required by the DOE for all work performed in its User Facilities, is a legally binding contract.   All User researchers must have …
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