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Natural Prodcast Episode 10: A Primer on Genome Mining
… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes with links to lots of other resources, especially for these primer episodes, if you want … often the things that suffer first when it comes to genome assembly. Some of the common biosynthetic systems – like a …
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New Lineages of Life Group
… and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … Schulz et al. (2020) Advantages and limits of metagenomic assembly and binning of a giant virus. mSystems. 5 (3) …
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Natural Prodcast Episode 6: Marc Chevrette
… episode we recorded. You’ll probably notice that the audio quality isn’t as good as what you’ll hear in other episodes, … at genomes and seeing where the really hard things to sequence were, and wondering what those … what those were … more isolates right now than we’ve processed. So it’s an exercise of going back to the fridge and grabbing who’s next …
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Frequently Asked Questions: Project Management
… the process. … Guidelines detailing the quantity and quality requirements for samples submitted to the JGI can be … date, the project manager may then schedule and allocate resources for DNA sequencing. … No. However, the JGI does … I request a culture/slant/DNA of an organism that has been sequenced at the JGI? … How do I check the current status of …
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Micro-Scale Applications Group
… technology in order to enhance the quality of single-cell genomes and directly link functional … access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated … now uses laser microdissection to selectively isolate and sequence microbial aggregates after first imaging with …
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Secondary Metabolites Program
The program works to uncover these hidden biochemical resources by exploring the genetic pathways responsible for … computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, … and Initiatives … Secondary Metabolites Program Head … Resources and Tools …
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How To Use Our Systems
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Natural Prodcast Episode 18: A CSP Primer
… at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we … There’s a lot of manual work in terms of the annotate, the assembly, the curation, QC, annotation of these data sets. … budget to get these samples. Do they have expertise and resources to extract the nucleic acids or collect the cell …
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JGI Portals
… algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … The JGI … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes … and Microbiomes … Integrated Microbial Genomes — Plasmid Resources … Integrated Microbial Genomes — Virus Resources … …
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Plant Program User Advisory Committee
… program's strategy, operations and scientific relevance and quality. …
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Special Initiatives & Programs
… of DE-FOA-0003453, which is eligible for BERSS). Available Resources All JGI products are available through BERSS. … capabilities and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA … by leveraging JGI experimental, computational and personnel resources for genomic research and sequence-based science.  …
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Secondary Metabolites Advisory Committee
Program strategy, operations, and scientific relevance and quality. The Committees do not perform management functions …
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