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… with my co-host Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the best. … algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the … the assembly, the curation, QC, annotation of these data sets. For our eukaryotes, in addition to sequencing the …

… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …

… the idea of taking all the different natural products data that there is and putting things, coalescing them, so … basic questions that we can only really address with bigger data sets and integrated data sets. So yeah, in terms of, I … you have a question, or want to give us feedback, tweet us @JGI or to me @danudwary. That’s D-A-N U-D-W-A-R-Y. If you …

… Access to the Molecular Foundry and use of JGI capabilities is free. The JGI supports remote users. Users conduct experiments in … users with various outputs free of charge, including data such as fully annotated genome assemblies or … them as part of the user calls. Please refer to the JGI CMM call available here, which includes the capabilities …

… The JGI has diverse capabilities in: DNA and RNA sequencing, … sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. …

… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.  … Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials Status CLOSED CLOSED … who have not been a PI on any approved proposal with the JGI Investigators interested in translating genomic …

… Program combines large-scale, time-series metagenomic data with detailed characterization of model systems to … and metatranscriptomics, to metagenomics and metabolomics data, shedding light on microbial metabolism and activity in … environmental viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by …

… free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized … All proposals undergo technical review by JGI staff as well as staff at the other participating …

… or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … let me know! I’m dying to hear from you. Toss an email to  jgi[email protected] , or leave us a review on Apple Podcasts … having a better understanding of how these, I guess, the mapping of the masses and the ions to structure in a …

… was fascinating, I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE … much I actually can learn just by really digging into the data and understanding what’s going on there. And now, … of searching the internet, searching literature, and making databases. Because that’s what I noticed is really a …

… The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online … (WIP) interface.    For commonly asked questions about JGI’s proposal calls and proposal submission, as well as … The “User” signing the JGI User Agreement will be an authorized representative from …

… to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … now, just because of the ways that we can generate data. So, obviously, it’s very apparent to us here at the … problematic in a case where we have all the sequence data but none of the chemical data. So in meta-genomic …