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Gene Expression: From On-Off Switch to Dial
… systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. Summary … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of betaxanthins. They used combinations of single guide RNA, or a single RNA piece that recognizes a particular area …
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2024 Progress Report
Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, … users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We … attendees with a rich agenda across our scientific programs, as well as workshops that gave participants …
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JGI Announces 2025 New Investigator Portfolio
… researchers) Each year, the JGI searches for novel research projects from PIs who have not led any previously accepted … and environmental DNA sequencing to explore microbial and plant interactions across unique ecosystems, … for this ongoing call; the next deadline for proposal submission is Sept. 9, 2025, for inclusion in the November …
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Trent Northen
… has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and … through the Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI … to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… first sampled the area in summer 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal … and Higher Education at Ensenada (CICESE) in her first microbial ecology paper in the journal PLoS One . “Puerto Nuevo is, historically, a fishing …
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Progress Reports: 2002–2020
Report … FY16 Progress Report … FY15 Progress Report … FY14 Progress Report … FY13 Progress Report … FY12 Progress …
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iPHoP: A Matchmaker for Phages and their Hosts
… opens the possibility of using phages to engineer microbial communities. One day, these phages could boost … nutrient cycling, or carbon sequestration. Summary Existing programs use a variety of approaches to match a virus with a … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every … known fossil record of land plants and evolved in early microbial biocrust environments.     … The U.S. Department …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… to spring. These biodiversity hotspots harbor specialized microbial communities living in extreme conditions. The … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, has … was done under Contract DE-AC52-07NA2734. Funding for this project was provided by the U.S. National Science Foundation …
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Cultivating Symbiotic Antarctic Microbes
… cycle. The JGI is sequencing large numbers of microbes and microbial communities that contribute to carbon cycling, and … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, experimentally demonstrated that … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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Computationally Classifying Fungal Lifestyles
… data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under Contract No. …
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JGI at the AGU Fall Meeting
December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research and tips for … on Intensive Agricultural Lands Changes Nitrogen Cycling Microbial Communities and Reduces N2O Production Potential … poster B45O-1813  : Maggie Bowman, PNNL: “EMSL’s 1000 Soils Project: core collection strategy and data types available” …
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