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2024 Progress Report
… Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, … in April 2024 — through serving an increased number of users with a record output of products, making data easier … A record number of primary users — 2,475 — had active proposals with us, along with …
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Frederik Schulz
… biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded project, Dr. Schulz established a … on agnostic pathogen detection and surveillance in complex samples. … University of Vienna (Austria) PhD Microbial Ecology and Bioinformatics, University of Vienna (Austria) …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… that would be produced by microorganisms — out,” said JGI user/collaborator Michelle O’Malley, a chemical and … at the  2022 JGI Annual Meeting . In an herbivore’s poop sample, there’s a whole heap of microbes, each potentially … powerful biomass processing. “So if you peer inside a poop sample, or a rumen sample, you’re going to find beautiful …
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JGI@25: Using Team Science to Build Communities Around Data
… Genomes (1KFG) Project through a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State … another 100 genomes in progress and 200 that are pending samples from users. Roughly 300 have been published. Spatafora said the …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… a combination of sequencing tools and techniques applied to samples collected from acidic iron-oxide microbial mats in … and direct microscopy. Through the JGI’s Community Science Program , the team used metagenome assemblies, … locations to thoroughly characterize the archaeal lineage, information that they believe will lend insights into …
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From Competition to Cooperation
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility, and supported by the Office of Science of the … Interfaces Scientific Focus Area in the Genomic Science Program, the Office of Biological and Environmental Research …
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Corals in Hot Water Get Help From Their Microbes
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Complete genome sequence of Kribbella flavida type strain (IFO 14399T)
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Gene Expression: From On-Off Switch to Dial
… systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. Summary … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under Contract No. …
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Party in the Rhizosphere
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Underground Research Laboratory, Hokkaido, Japan. From samples of both environments, they used fluorescence  in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… of Energy (DOE) Biological and Environmental Research (BER) program to advance a fundamental understanding of genome … Office of Science, Biological and Environmental Research program under award no. DE-SC0023027 (to SSM and JLM) with … ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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