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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … Spatafora said the work has “significantly advanced our understanding of 1 billion years of evolution in Kingdom … Filling in the Plant Tree of Life … Genome Insider …
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Uncovering Novel Genomes from Earth’s Microbiomes
… metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the … characterizing the planet’s microbial diversity is key to understanding the roles of microorganisms in regulating … it was a nice example of “big-data” mining to gain a deeper understanding of the data and enhancing the value by making …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science … carbon and mitigating greenhouse gas emissions, and understanding how to improve soil health can help mitigate … The work conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The … that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential of … factors and even other organisms can fuel a deeper understanding of these transcriptional regulatory networks. …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a … soil viruses and AMGs. It could spawn future research into understanding why these AMGs exist in the first place, and … the FICUS program to JEM and used resources at the DOE Joint Genome Institute (JGI) and the Environmental Molecular …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga into a powerful platform … Research (BER) program to advance a fundamental understanding of genome biology, and develop genome-scale … supported for his work on  Auxenochlorella genome sequencing and assembly in Berkeley, in part, through the …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among … cycling of carbon, nitrogen, and other elements, better understanding the predator-prey dynamics in these mats helps …
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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are symbionts, rather than … that contribute to carbon cycling, and is interested in understanding the genomic basis and ecological consequences …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an esteemed interdisciplinary delegation from the University of … Berkeley Lab.  Building on the momentum of a Memorandum of Understanding (MoU) signed between UDE and Berkeley Lab in …
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Graduate Students Get Thesis Research Opportunity at the JGI
… Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s lab at … a remarkable opportunity to launch a pilot project and begin the work of understanding how engineered environments contribute to … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help … analysis identified fungal gene families that help determine if these fungi act as friends or foes. The Impact … genes that degrade plant cell walls and break down plant sugars. The results also revealed that the most beneficial …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers … models of global climate. They may also provide a basic understanding of the roles microbiomes play in determining … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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