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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & Education department of … collaborations were: Simon Roux and Matthew Kellom for the JGI Metagenome Program Ellen Dow and Elisha Wood-Charlson … DOE Systems Biology Knowledgebase (KBase) Ian Blaby for the JGI DNA Synthesis Platform Ben Bowen and Katherine Louie for …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… took effect in six San Francisco Bay Area counties. The JGI, located at Lawrence Berkeley National Laboratory, is … been extended statewide. In this brief captioned video, JGI Chief Informatics Officer Kjiersten Fagnan reflects on … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Nikos Kyrpides
… the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics … the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) …
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2024 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … Genome Institute has continued its journey to realize our new vision to, “ Lead genomic innovation for a sustainable … The organisms on our planet encode these functions in their genomes, and the JGI is uniquely positioned to combine …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The Science … evolved separately from other similar systems, and offers new clues into a unique environment in the natural world. … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published …
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New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
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The JGI announces 2024 awardees for our Community Science Program annual call
Hannah Schulman, Bram Stone and Jana Voriskovaa The JGI is excited to announce the fifteen scientists selected … CSP proposals this year,” noted Tanja Woyke, who heads JGI’s User Programs. “These PIs have proposed research that … this call, as well as smaller-scale calls including our New Investigator and Functional Genomics calls, here on our …
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Strain Engineering
… integrated into a taxonomically diverse suite of microbial chassis strains for elevated opportunity for …
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Simon Roux
… tools to identify virus sequences, the design of new experimental approaches to link viruses to their … knowledge of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research … the quality and completeness of metagenome-assembled viral genomes. Nature biotechnology 39, 578-585. Roux et al., …
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Forest Fungi, Seagrass, and a New View of Symbiosis
Three stories of JGI-supported research, connected to nutrient cycles. …
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Hiroshi Otani
… research activity is focused on developing and implementing new technologies and methodologies that facilitate discovery … of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and … H, Mouncey NJ. New keys to unlock the treasure trove of microbial natural products. Nat Rev Microbiol. 2021 …
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JGI Workshop at 2025 Aquatic Sciences Meeting
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