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Jeremy Schmutz
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature 492: 423-427. …
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Ian Blaby
Cell . 25: 11, 4305-4323. 2013 Blaby et. al., Experimental evolution of a facultative thermophile from a mesophilic …
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JGI Hosts GPU Hackathon in May
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Emiley Eloe-Fadrosh
… to pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental … Member, Duke University (2018-2020) Section Head, Microbial Evolution & Genomics, F1000Prime Reviewer for major journals …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, … genomes from microorganisms are shotgun (group) metagenomic sequencing and single-cell (individual) sequencing. Shotgun metagenomic sequencing takes much less time than its …
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How to Target a Microbial Needle within a Community Haystack
… of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their … their environments. Summary The traditional shotgun metagenomics approach to learning more about environmental …
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2024 Progress Report
… algorithms to identify billions of protein sequences in metagenomes.  We continue to engage with our user community … outreach activities and hosting visiting scientists at all stages of their careers. Our staff have organized, chaired … from this review, I can say that a key area for the JGI’s evolution is in how we manage our data and how we can make …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… short audio production, we’ll hear from Karolina Heyduk, an evolutionary plant biologist at the University of Hawai’i at …
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Training the Next Generation of Talent
I’ll take that knowledge back with me.” Now a second-year evolutionary biology student in David Ardell’s lab, he also …
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Uncovering Novel Genomes from Earth’s Microbiomes
… and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … sequencing and analysis. “Using a technique called metagenome binning, we were able to reconstruct thousands of metagenome-assembled genomes (MAGs) directly from sequenced …
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JGI-UC Merced Interns Share Their 2021 Experiences
Phages … Polymorphisms Created by Transposable Elements … Evolution of the Mitochondria Internship … Cross Species … … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on … of Rice and Arabidopsis Roots … Making Big Data Metagenomic Clustering Scalable … Cataloging Lineage Specific …
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A Collaboration to Improve Plant Genome Annotations Across Species
… allowed us to pinpoint and rank biologically relevant and evolutionarily conserved genes that could be potential …
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