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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly complex — … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … (Berkeley Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Cited Researchers list assembly by Clarivate Analytics. In 2020, she was named a Yellowhammer Woman of Impact.     … viridis ). The team of researchers at the Danforth Plant Science Center (Danforth Center), HudsonAlpha and the JGI …
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Ancient Algae Reveal Secrets of Plant Evolution
… helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , scientists have enhanced our understanding of how early … three strains of  Zygnema circumcarinatum . Published  May 2024 in  Nature Genetics by an international research …
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SPRUCE-ing Up Science
… expertise, a combination of biology and computer science, to reveal clues about how microbial and bacteria … When Lawrence embarked on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand … Sphagnum peatmoss resilience to warming . New Phytol. 2022 Jun;234(6):2111-2125. doi: 10.1111/nph.18072.   Byline: …
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DOE JGI Interns Share Their Summer Experiences
DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the interns were two undergraduate students … . CAMP is a statewide initiative funded by the National Science Foundation (NSF) and supports underrepresented minorities in science, technology, engineering and math (STEM) fields. …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more complete genomic results … scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better … Cole, senior author of this work. Cole is a research scientist at the U.S. Department of Energy (DOE) Joint … view of both plant and fungal activity at different stages of this symbiosis. Within that activity, Serrano, Cole …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on … As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on …
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Cultivating Symbiotic Antarctic Microbes
… they are symbionts and not free-living organisms. The Science Researchers employed multiple microbiology and … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … to that of a free-living organism. First discovered in 2011, Nanohaloarchaea are part of the DPANN (Diapherotrites, …
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A Natural Mechanism Can Turbocharge Viral Evolution
… allows microbes to adapt to changing environments. The Science The first step in the deadly dance between a virus … sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and is … acknowledge support from the EMERGE Institute (NSF #2022070). Sequencing of the Stordalen Mire samples used …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
In   April 2020, we mark both the 50th celebration of Earth Day on … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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