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I-Min (Amy) Chen
I-Min A. Chen received her Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented … v.7.0: content updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, … taxonomic, and ecological metadata. Nucleic acids research Jan 2023 Camargo AP, Call L, Roux S, Nayfach S, …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look … and cotton D genomes. A multi-institutional team including researchers at the U.S. Department of Energy (DOE) Joint … was to try to bring in molecular methods of breeding into cotton,” said Schmutz, who heads JGI’s Plant Program. …
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JGI@25: Using Team Science to Build Communities Around Data
Martin of the French National Institute for Agricultural Research (INRAE) focused on in-depth exploration of … in gene function across the phylogeny — and link these into our DOE crop plants, so we can learn from evolution …
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A Natural Mechanism Can Turbocharge Viral Evolution
… these viruses to target new microbial prey. The Impact This research provides a much more comprehensive understanding of … Scientists might then harness them as molecular tools for research and industry applications. Summary In their … opportunity to study how DGRs work and develop more of them into new biological tools. … The work conducted by the U.S. …
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Dan Rokhsar
… a Professor of Genetics, Genomics and Development after his research interests shifted from condensed matter physics to … biology, genomics and evolutionary biology. Dr. Rokhsar’s research is focused on understanding the origin, evolution, … Cornell University, NY Postdoctoral scientist, IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 …
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Crysten Blaby-Haas
… between JGI and the Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley lab. … Merchant at UCLA as a NIH Ruth L. Kirschstein National Research Service Award (NRSA) Individual Postdoctoral … Chan CX, Marriage TN, ... and Prochnik S. (2017) Insights into the red algae and eukaryotic evolution from the genome …
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David Goodstein
… larger comparative genomic systems as the JGI’s eukaryote research efforts expanded to include basal metazoans and … gene descriptions across the plant kingdom. Nucleic acids research 51 (16), 8383-8401. JT Lovell et al., 2022. … platform for green plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board …
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Nick Everson
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes … found in soil samples, and assembled those RNA transcripts into a metatranscriptome. Overall, they found that despite … “In the next few years, I think we will have a kind of global map of the fungal diversity, but we are still missing …
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Trent Northen
Northen has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental research, including through the Joint BioEnergy Institute … metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using metabolomics to link genomes …
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Effects of Polar Light Cycle on Microbial Food Web
A long-running time-series study offers a first glimpse into a full season’s cycle of this polar environment. This … understanding of carbon and other nutrient cycles on a global scale. Summary Ace Lake, located in the Vestfold … roughly 5-7,000 years ago and has been well-studied by many researchers for nearly five decades. In these frigid …
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Cultivating Symbiotic Antarctic Microbes
… are symbionts and not free-living organisms. The Science Researchers employed multiple microbiology and ‘omics … with the humans and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of … from environmental samples and cultivated microbes, researchers have been able to gain further insights about …
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