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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … and importance in the fabric of our lives. In the United States, cotton production centers around two varieties: 95 … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled …
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Genome-resolved adaptation strategies of Rhodobacterales to changing conditions in the Chesapeake and Delaware Bays
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a dizzying array of combinations, are unremarkable, save perhaps for the … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). And one of the tools that …
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Calculating the Costs of Multiple Switchgrass Gene Copies
Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted … to expand its habitat range. But at what cost?  A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be spotted with a striped … student in bacterial immunologist Joe Bondy-Denomy’s lab at the University of California, San Francisco. Both are …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… take in more nutrients to fuel growth. The Impact Over the last 40 years, summer sea ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). In their analysis, they found the …
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Complete Genome Sequence of Phormidium yuhuli AB48, Isolated from an Industrial Photobioreactor Environment
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
Tips for Successful Community Science Program (CSP) Applications Webinar inviting researchers to submit white papers … and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … the data, either by adding team members as co-PIs or collaborators on the proposal, or at the very least providing …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … transfers from bacteria have all armed the plant with an array of defense mechanisms. The Impact There are over 10,400 … co-opted from those directing spore development in the last common ancestor of seed plants and ferns. The genome is …
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Access to Rock Star Scientists
Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay Paropkari, … their work delivered during the 5th anniversary celebration of the internship program. Candace Cole, UC Merced JGI … to pursue a STEM career, specifically in a government lab. My favorite thing is the mentorship provided by JGI. …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis capability … (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is published in a … after her internship. “That level of commitment and collaboration between intern and mentor is what we strive for,” … their work and its impacts at Berkeley Lab and beyond. Last summer, Wint hosted a virtual four-day data carpentry …
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