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IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses
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Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … and offered a way for researchers to study the planet’s microbial diversity, much of which remains unknown and … year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a …
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Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate
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Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI
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Pathway-Centric Analysis of Microbial Metabolic Potential and Expression Along Nutrient and Energy Gradients in the Western Atlantic Ocean
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis
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Open Frameworks Training the Next Generation of Scientists
… technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of … involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User … to connect educators and empower them to utilize program resources. MICROnet is  built around a community of …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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You Can Move, But You Can’t Hide
… Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … Berkeley National Laboratory (Berkeley Lab), with computing resources provided by NERSC, another user facility at … in soils and water. MGEs like viruses and plasmids drive microbial processes and evolution. This is because MGEs can …
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Jeremy Schmutz
… back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for … human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … de novo plant assembly and the post-genome computational analysis at HudsonAlpha. …
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