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Building the crops of tomorrow: advantages of symbiont-based approaches to improving abiotic stress tolerance
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Mobile MUTE specifies subsidiary cells to build physiologically improved grass stomata
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Expressing the Thermoanaerobacterium saccharolyticum pforA in engineered Clostridium thermocellum improves ethanol production
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Validating genome-wide CRISPR-Cas9 function improves screening in the oleaginous yeast Yarrowia lipolytica
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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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There is an “I” in team: individual improvements in supercharged cellulase cocktail facilitates cooperative cellulose degradation
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Synthetic Biology Lab
… technologies to the broader community.  We focus our efforts on integrating database mining and sequence design … ever-higher levels of throughput. We also develop methods for efficient QA/QC based on next-generation sequencing … The applications group is focus on developing methods for converting digital information from sequence databases …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … these lines, all with the goals of better data reporting, improved collaboration, and more comparable analysis. A Data …
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Jeremy Schmutz
… with the JGI dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for … 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, … O., Lovell, J.T. et al.  2024.The complex polyploid genome architecture of sugarcane. Nature 628, 804–810. …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of … was being waged. In the JGI@25 video below, Susan Lucas, former JGI Production Department Head and current ESnet … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists usually employ …
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MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
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