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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director for Computational … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At … pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, …
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Benjamin Cole
Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the … … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List … of Cell Identity as an R package … Education … Selected Publications … Software …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes … helpful metabolism: who’s responsible for what biochemical processes? Now, an international team of researchers has …
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You Can Move, But You Can’t Hide
Researchers at the JGI develop a tool to quickly and accurately … and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found … Science User Facilities operated under Contract No. DE-AC02-05CH11231. This work also received support from the …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine … hitchhikers. These organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they … Frontiers Group, the National Science Foundation (MCB-1244557 to J.A.D.) and the Lawrence Berkeley National …
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Tanja Woyke Elected to American Academy of Microbiology
Congratulations to the JGI’s Tanja Woyke , who has been … of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for …
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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the information technology company … areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … Technologies Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first …
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Scaling Up Existing Skill Sets
… of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for … opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their experiences below. …
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