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The Case for Conservation
… a single set of chromosomes, are available. The genome assemblies highlight the multiple advances in sequencing technologies applied to the effort. The Impact … In a recent Scientific Advances article , a team led by McDaniel and his former graduate student Sarah Carey, now …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Chytridiomycota (the “chytrids”).  A collaborative team led by Joey Spatafora at Oregon State University, Jason Stajich … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … the zoospores were then sent to the JGI for whole genome sequencing using the Illumina platform. Unfortunately, both …
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Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics
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Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies
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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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Functional Metagenomics of Spacecraft Assembly Cleanrooms: Presence of Virulence Factors Associated with Human Pathogens
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Ecological Assembly Processes Are Coordinated between Bacterial and Viral Communities in Fractured Shale Ecosystems
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Haplotype‐resolved genome assembly of Populus tremula × P. alba reveals aspen‐specific megabase satellite DNA
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Draft genome assembly and annotation of Haematococcus lacustris strain Liv1, an industrial astaxanthin-producing microalga
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Jeremy Schmutz
… 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement strategies for de novo … management for the reference eukaryotic genomes produced by the DOE Joint Genome Institute and the collaborative … 555-561. The International Brachypodium Initiative. Genome sequencing and analysis of the model grass Brachypodium …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  … this episode: the software evolution that made metagenome assemblies like this possible. …
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Metagenomic and Metatranscriptomic Analyses Revealed Uncultured Bacteroidales Populations as the Dominant Proteolytic Amino Acid Degraders in Anaerobic Digesters
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