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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. … data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in …
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Adopt-A-Genome
In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the … and publish first-author papers, making the data available for future research. Hear from Rekha Seshadri (JGI) and Matt … and Mark Soghomonian share what it was like to take on one of these genomes.  …
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Enlarging Windows into Understanding Gene Functions
… array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … Lawrence Berkeley National Laboratory (Berkeley Lab). And one of the tools that researchers can apply to study the … it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which allows …
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Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … in the environment — their sheer genetic diversity. As pioneers of this field, the JGI has leveraged metagenomics to …
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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern … metabolites and associated genes are great resources for bioremediation, new agricultural applications or …
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The Case for Conservation
… advances in sequencing technologies applied to the effort. The Impact Found on all continents, including … heavy metal contamination, and drought. The moss genomes’ metabolic pathways could lead to the discovery of … genes of interest could be associated with a plant’s sex. One outcome could be superfemale plants that have increased …
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