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Back in the Lab: the 2023 Summer Intern Experience
… in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 …
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Genome Insider
Genome Insider is a podcast that showcases the work of JGI collaborators in brief forays, connecting audiences with … to contribute to a more sustainable world. Learn about JGI-supported projects, delving into the researchers’ …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … enabling microbiome science. Nat Rev Microbiol 18, 313–314 (2020). https://doi.org/10.1038/s41579-020-0377-0 S. Pau and … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … the microbiology of watershed systems, they utilized over 160 river water samples collected through WHONDRS, a …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science … open year-round, but proposals submitted by September 21, 2020, will be included in the next review. Q&A from the …
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2023 Progress Report
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: … really first heard about the JGI synthesis grant during a presentation that [DNA Synthesis Science Head] Yasuo [Yoshikuni] gave back in 2016.” Alper’s first approved JGI proposal came through the …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the … aquatic to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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A Collaboration to Improve Plant Genome Annotations Across Species
… improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, … to standardize the experimental protocols. Then, in 2020, seven more groups joined the project to contribute to …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… of the groundwater were nearly cleared of contamination. By 2020, the water was at contamination levels that are below … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the National Center for Research Resources (NCRR) (5P20RR016480-12) and the National Institute of General Medical …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … own perspectives. The interns from this cohort and their JGI mentors are listed below, along with their project focus … is Dr. Jonelle Basso. Shayna Bennett : So while here at the JGI, I’ve been studying mobile genetic elements and CRISPR …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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