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An Addiction Crucial to a Fungus’ Reproduction
… candidate bioenergy feedstocks sunflower, and maize, and a part of the oil-producing Mucoromycotina group, about which … JGI team sequenced and annotated a host genome (Rm ATCC 52813) as part of the 1000 Fungal Genomes project. As reported in the November 29, …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… honored to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The meeting was a hybrid … had a powerful tool,” Doudna said during her keynote. In 2012, Doudna published results indicating how CRISPR Cas-9 … blooms. Their work takes a view across many scales: from natural blooms in the ocean, down to smaller, induced algal …
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Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Those from the JGI whose publications rank in the top 1% by citations for field and publication year are: Igor … looked to the evolutionary history of strawberries as part of a study to develop a method for identifying …
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Fungal Friends or Foes in Plant Roots
… but not all plants and fungi can form such symbiotic partnerships. To learn more about these other plant-fungal … toward filling gaps on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled … culture collection consisting of fungal species from natural Arabidopsis populations around Europe. The JGI …
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Mindfully Moving JGI
… to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years after the JGI united the … our environment,” said Christine Naca, JGI’s SWELL Lead and part of the IGB Move Team. “And also, so that the reusable …
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Streamlining Regulon Identification in Bacteria
… as identification of target genes of transcription factors, particularly sigma factors that initiate transcription in … sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces coelicolor . The Impact As … of Energy Office of Science under Contract No. DE-AC02-05CH11231 …
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An Automated Tool for Assessing Virus Data Quality
… an elephant for the first time. Based on the single body part each blind man touches – a tusk, the ear, or the tail – … reported in Nature Biotechnology , a team from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… for PacBio? A(nswer):  Regular PacBio typically requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but … performed on metagenomes as a custom analysis, i.e. is not part of the standard analysis pipeline but can be done on … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Soil virus offers insight into maintaining microorganisms
… that may promote soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … three domains of life.  Using the IMG suite, JGI retrieved 142 of the GH75 AMGs, which encode enzymes that break down …
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Effects of Polar Light Cycle on Microbial Food Web
… and offers new clues into a unique environment in the natural world. The Impact From the polar regions to the deep … cycles. Water samples from Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A … Wales, Australia, and included researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited … Those from the JGI whose publications rank in the top 1% by citations for field and publication year are: Igor … the Tree of Life.  Its latest addition — made possible in part by contributions from  Ivanova, Woyke, Marcel …
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