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Ultraconservation identifies a small subset of extremely constrained developmental enhancers
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … population genomics to find that while archaeal hitchhikers may often act as parasites, in other cases, they likely help … but many other systems exist. Investigating the CRISPR spacer systems of these two organisms suggested new …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… to the 2023 Highly Cited Researchers from the JGI recognized for their “significant influence in their … individual researchers from 67 countries. Those from the JGI whose publications rank in the top 1% by citations for …
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Operating Expenses
FY2023 Spending Profile The JGI is funded primarily by the DOE Office of Biological and … Research (BER), a program within the DOE Office of Science. …
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Partners
The JGI leverages its existing partnerships and develops others providing complementary expertise to advance the science and serve as impact multipliers . The JGI has a … through the Facilities Integrating Collaborations for User Science (FICUS) program.     …
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Understanding Wildfire Recovery, Starting in Soil
… at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the … of plants and animals, but with climate change driving more extreme wildfires, more and more forests are under threat. … a step further, using both DNA and messenger RNA (mRNA) sequencing to identify those traits that have helped fungi, …
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How to Target a Microbial Needle within a Community Haystack
… microbes from complex environmental samples. The Science A team led by researchers at the Max Planck … for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast … User Facility, is supported under Contract No. DE-AC02-05CH11231. This study was funded by the Max Planck Society. …
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Picking Up Threads of Cotton Genomics
Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … due to their difficulty and complexity, but we have been extremely pleased with Jeremy, Jane and their team. Many … you have to alter.’ Why should we invest in something that may not be an immediate benefit to us for a decade? We …
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The Case for Conservation
… “older than dinosaurs” could help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant … The genome assemblies highlight the multiple advances in sequencing technologies applied to the effort. The Impact … yield. Conversely, some crops such as bioenergy sorghum may need sterile males; plant breeding experiments could be …
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Genome Insider
Genome Insider is a podcast that showcases the work of JGI collaborators in brief forays, connecting audiences with the people behind the science. Hear diverse voices in science talk about their groundbreaking research to better …
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Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations
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Kjiersten Fagnan
… the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head. In 2018, Dr. Fagnan … Storage and Analysis, 2018, pp. 717-730, doi: 10.1109/SC.2018.00060. Wood-Charlson, E.M., Anubhav, Auberry, … Hick and D. Jacobsen and D. Skinner and N.J. 2014. Wright Extreme Data Science. Big Data and Extreme-Scale Computing …
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