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New Research Sheds Light on Diversity in the Deep Sea
… conditions — like temperature, pH levels or the availability of certain nutrients — influence the makeup and … a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, contributed metagenomic … the communities studied. The datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) …
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Leo Baumgart
… binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and … San Diego Postdoctoral training in bioinformatics, Lawrence Berkeley National Lab … et al. "Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)." In 2025 IEEE …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, … from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… researchers from the University of California (UC), Berkeley, UC Agriculture and Natural Resources (ANR), US … P­­lant Gene Expression Center, Pacific Northwest National Laboratory, and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) uncovered a broad diversity of … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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The More the Merrier: Making the Case for Plant Pan-genomes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), relied on a model grass system … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Waiting to Respire
… applied by a common ancestor to all five lineages. In the lab of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), has developed a command-line tool …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. … in human and other vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research … training Wellcome Trust Sanger Institute, UK and Lawrence Berkeley National Lab …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida high school … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), embarked on a pilot project with … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis capability … The webinar featured  Trent Northen and Ben Bowen of the  JGI Metabolomics Program , along with Jenny Mortimer, …
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CSP Functional Genomics
… function.  The emphasis is on projects leveraging JGI’s Biodesign and ‘omics capabilities to enhance … achievable without the capabilities and expertise available at the JGI. Proposals to this call may be submitted to the JGI at … Proposers are encouraged to review the JGI’s sample requirements . Samples that are not available …
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