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The fungus that made itself at home
… dry rot Serpula lacrymans adapted to a new ecological habitat. The Science By comparing genetic information from … to thrive in manmade environments. As reported January 5, 2018 in The ISME Journal , a team led by University of Oslo … from Europe, that was sequenced and analyzed by the JGI. The researchers found that S. lacrymans var. lacrymans …
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Partners
… The JGI leverages its existing partnerships and develops others … advance the science and serve as impact multipliers . The JGI has a long-term partnership with the HudsonAlpha … and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy Research …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in his backyard in … in the peatlands as the world warms. Lawrence and his colleagues will likely hit the road and begin attending …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of … and giant viruses. While the microbes in a single drop of water could outnumber a small city’s population, the number … out and characterize uncultivated viruses. For instance, a 2018 study from a JGI-led team uncovered giant viruses in …
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Genome Insider
… Genome Insider podcast brings listeners into the science that the JGI makes possible. Each episode, host Menaka Wilhelm interviews researchers — JGI Users — and dives into their work on all kinds of …
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles … Find more details on the instrumentation we use and our methodology for metabolite analyses.  …
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User Executive Committee
… The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical …
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Project Management Office
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and … of samples for sequencing, or the submission of sequencing data for synthesis – the DOE requires that all work performed …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley … with more than 15,000 secondary users who made use of our data. We completed 39,870 projects in FY24 We generated 871 …
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Analyze Data
… The JGI supports the entire data life cycle — from experimental design to reuse. Armed … research community.   We have two key priorities:  The JGI is involved in efforts to integrate data in support of … Chief Informatics Officer …
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Hiroshi Otani
… and implementing new technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and … Feb 17;50(1):kuad005. Otani H, Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. … and cancer genetics. Dr. Blow carried out postdoctoral work at LBNL, where he worked on computational and experimental … in human and other vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research …
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