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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead …
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Stepwise recombination suppression around the mating-type locus in an ascomycete fungus with self-fertile spores
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Dispatches From JGI Interns
… Every summer, the flagship JGI-UC Merced Internship Program invites undergraduate and graduate students to engage in real, impactful research projects with JGI …
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JGI Workshop at SIMB NP Meeting
… intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters (BGCs) in native hosts, … available genome sequences. The DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, has been developing and applying new …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … at protein function within them. The work was led by a team of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome … His responsibilities include the development of novel computational tools to identify virus sequences, the design of new … in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université …
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Genome‐wide associations with flowering time in switchgrass using exome‐capture sequencing data
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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… give rise to some of the largest food webs on Earth. And at their base are microscopic, photosynthetic algae. But … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was done through the JGI Community Science Program . Using an ecology metric called beta diversity, the team …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene … laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and characterizing … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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JGI Workshops at PAG
… is rising. The purpose of this Workshop is to illustrate the expansion of this field and bring it to the … genomics community. Jan. 13 workshop: BER Plant Genomic Science In this workshop, we will present current and ongoing developments at the JGI and KBase toward integrative biology and hear from …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays … as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … by a DOE Joint Genome Institute Community Science Program (JGI-CSP) grant (CSP2568 to P.Z., ES and AH), and by a …
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